This is BRIDGEcereal Rice Page
Main
Instruction
Wheat
Maize
Sorghum
Rice
Barley
Reference
Rice Alignment output
Transcript name (such as LOC_Os01g01120.1 for Nipponbare) or YourID for fasta sequence
(1) Check Transcript ID
Pick Genome (Please select one!) :
02428
9311
Basmati1
CG14
CN1
D62
DG
DHX2
FH838
FS32
G46
G630
G8
II32
IR64
J4155
kosh
KY131
Lemont
LJ
N22
NamRoo
Nipponbare
R498
R527
S548
TM
Tumba
WSSM
Y3551
Y58S
YX1
ZH11
Chromosome (Please select one!)
chr1
chr10
chr11
chr12
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
CDS (Coding sequence); OR your fasta sequence :
CDS
fasta_seq
Your fasta sequence (Please add first line: >YourID Before pasting your DNA sequence!)
Upload Parent1 (Format: Parent1_chr**.fa.gz)
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Upload Parent2 (Format: Parent2_chr**.fa.gz)
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Upstream (kb), max input should <=100 (kb)
Downstream (kb), max input should <=100 (kb)
Genomes (Defalt: all genomes selected) :
02428
9311
Basmati1
CG14
CN1
D62
DG
DHX2
FH838
FS32
G46
G630
G8
II32
IR64
J4155
kosh
KY131
Lemont
LJ
N22
NamRoo
Nipponbare
R498
R527
S548
TM
Tumba
WSSM
Y3551
Y58S
YX1
ZH11
Distance filter between mapped clusters (1kb-50kb) :
Expected CDS size compared to Reference (fold change:0.25-4) :
(2) Submit
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