This is BRIDGEcereal Wheat Page
Main
Instruction
Wheat
Maize
Sorghum
Rice
Barley
Reference
Wheat Alignment output
Transcript name (such as TraesCS4A02G058900.1 for IWGSC) or YourID for fasta sequence
(1) Check Transcript ID
Pick Genome (Please select one!) :
arinalrfor
IWGSC
jagger
julius
lancer
landmark
mace
mattis
norin61
spelta
stanley
Chromosome (Please select one!)
chr1A
chr1B
chr1D
chr2A
chr2B
chr2D
chr3A
chr3B
chr3D
chr4A
chr4B
chr4D
chr5A
chr5B
chr5D
chr6A
chr6B
chr6D
chr7A
chr7B
chr7D
CDS (Coding sequence); OR your fasta sequence :
CDS
fasta_seq
Your fasta sequence (Please add first line: >YourID Before pasting your DNA sequence!)
Upload Parent1 (Format: Parent1_chr**.fa.gz)
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Upload Parent2 (Format: Parent2_chr**.fa.gz)
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Upstream (kb), max input should <=100 (kb)
Downstream (kb), max input should <=100 (kb)
Genomes (Defalt: all genomes selected) :
arinalrfor
IWGSC
jagger
julius
lancer
landmark
mace
mattis
norin61
spelta
stanley
Distance filter between mapped clusters (1kb-50kb) :
Expected CDS size compared to Reference (fold change:0.25-4) :
(2) Submit
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